diff --git a/package.json b/package.json
index 816383161..c70df16d6 100644
--- a/package.json
+++ b/package.json
@@ -176,7 +176,7 @@
     "jsx-test-suite": "0.0.2",
     "knip": "6.33.0",
     "less-test-suite": "0.0.1",
-    "magic-string": "1.2.3",
+    "magic-string": "1.4.1",
     "make-synchronized": "0.8.0",
     "nano-spawn": "2.1.0",
     "node-style-text": "2.1.2",
diff --git a/scripts/build/hacks/modify-typescript-module.js b/scripts/build/hacks/modify-typescript-module.js
index 31c4d9d62..00b46774f 100644
--- a/scripts/build/hacks/modify-typescript-module.js
+++ b/scripts/build/hacks/modify-typescript-module.js
@@ -1,6 +1,6 @@
 import path from "node:path";
 import escapeStringRegexp from "escape-string-regexp";
-import MagicString from "magic-string";
+import { MagicString } from "magic-string";
 import { outdent } from "outdent";
 import { PROJECT_ROOT, writeFile } from "../../utilities/index.js";
 import UNUSED_SPECIFIERS from "./typescript-unused-specifiers.js";
@@ -38,23 +38,39 @@ class TypeScriptModuleSource {
     this.modules = [...getModules(text)];
   }
 
-  replaceModule(module, replacement) {
-    if (typeof module === "string") {
-      const found = this.modules.find((searching) => searching.path === module);
+  replaceModule(moduleOrFilter, replacement) {
+    let modules;
+    if (typeof moduleOrFilter === "string") {
+      const modulePath = moduleOrFilter;
+      const found = this.modules.find(
+        (searching) => searching.path === modulePath,
+      );
 
       if (!found) {
-        throw new Error(`Module '${module}' not found`);
+        throw new Error(`Module '${modulePath}' not found`);
       }
 
-      module = found;
+      modules = [found];
+    } else if (typeof moduleOrFilter === "function") {
+      const filter = moduleOrFilter;
+      const matched = this.modules.filter((searching) => filter(searching));
+
+      if (matched.length === 0) {
+        throw new Error("No matched modules found");
+      }
+      modules = matched;
+    } else {
+      modules = [moduleOrFilter];
     }
 
-    this.#source.overwrite(module.start, module.end, replacement);
+    for (const { start, end } of modules) {
+      this.#source.overwrite(start, end, replacement);
+    }
     return this;
   }
 
-  removeModule(module) {
-    return this.replaceModule(module, "");
+  removeModule(moduleOrFilter) {
+    return this.replaceModule(moduleOrFilter, "");
   }
 
   hasModule(module) {
@@ -105,12 +121,6 @@ class TypeScriptModuleSource {
     return this;
   }
 
-  applyChanges() {
-    const text = this.#source.toString();
-    this.#source = new MagicString(text);
-    this.modules = getModules(text);
-  }
-
   toString() {
     return this.#source.toString();
   }
@@ -176,18 +186,10 @@ function modifyTypescriptModule(text) {
   source.removeModule(entry);
 
   // Deprecated
-  for (const module of source.modules) {
-    if (module.path.startsWith("src/deprecatedCompat/")) {
-      source.removeModule(module);
-    }
-  }
+  source.removeModule(({ path }) => path.startsWith("src/deprecatedCompat/"));
 
   // jsTyping
-  for (const module of source.modules) {
-    if (module.path.startsWith("src/jsTyping/")) {
-      source.removeModule(module);
-    }
-  }
+  source.removeModule(({ path }) => path.startsWith("src/jsTyping/"));
 
   // services
   for (const module of source.modules) {
@@ -211,26 +213,18 @@ function modifyTypescriptModule(text) {
 
   // server
   source.removeModule("src/typescript/_namespaces/ts.server.ts");
-  for (const module of source.modules) {
-    if (module.path.startsWith("src/server/")) {
-      source.removeModule(module);
-    }
-  }
+  source.removeModule(({ path }) => path.startsWith("src/server/"));
 
   // `transformers`
   source.removeModule("src/compiler/transformer.ts");
-  for (const module of source.modules) {
-    if (module.path.startsWith("src/compiler/transformers/")) {
-      source.removeModule(module);
-    }
-  }
+  source.removeModule(({ path }) =>
+    path.startsWith("src/compiler/transformers/"),
+  );
 
   // `typingsInstaller`
-  for (const module of source.modules) {
-    if (module.path.startsWith("src/typingsInstallerCore/")) {
-      source.removeModule(module);
-    }
-  }
+  source.removeModule(({ path }) =>
+    path.startsWith("src/typingsInstallerCore/"),
+  );
 
   // `ts.moduleSpecifiers`
   source.removeModule("src/compiler/_namespaces/ts.moduleSpecifiers.ts");
diff --git a/yarn.lock b/yarn.lock
index 7625795c5..0ee49979f 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -1891,7 +1891,7 @@ __metadata:
   languageName: node
   linkType: hard
 
-"@jridgewell/sourcemap-codec@npm:^1.4.14, @jridgewell/sourcemap-codec@npm:^1.5.0, @jridgewell/sourcemap-codec@npm:^1.5.5, @jridgewell/sourcemap-codec@npm:^1.6.0-beta.0":
+"@jridgewell/sourcemap-codec@npm:^1.4.14, @jridgewell/sourcemap-codec@npm:^1.5.0, @jridgewell/sourcemap-codec@npm:^1.5.5, @jridgewell/sourcemap-codec@npm:^1.6.0, @jridgewell/sourcemap-codec@npm:^1.6.0-beta.0":
   version: 1.6.0
   resolution: "@jridgewell/sourcemap-codec@npm:1.6.0"
   checksum: 10/eb53fbf7eb4051302a599d6b91425f381168b2856f321336fb00852cea1e0c1904af2610c157b1535e94a61caa98f0bd068d1d0394dd46adf9e9c45c4e11af91
@@ -6816,12 +6816,12 @@ __metadata:
   languageName: node
   linkType: hard
 
-"magic-string@npm:1.2.3":
-  version: 1.2.3
-  resolution: "magic-string@npm:1.2.3"
+"magic-string@npm:1.4.1":
+  version: 1.4.1
+  resolution: "magic-string@npm:1.4.1"
   dependencies:
-    "@jridgewell/sourcemap-codec": "npm:^1.5.5"
-  checksum: 10/d1a943913fad82733704cc6b4ff327a1ee9dcdbaa1475931f03368aa0ac54305eb37f591ff1478c36e7f9c62dabc335d6dc5d28744e632f62d42f350031d758f
+    "@jridgewell/sourcemap-codec": "npm:^1.6.0"
+  checksum: 10/e24599bdd37e2bd4d3bed3e52739791d47652ce16a13f31c2fc7cc760912549a3af4db2625c4a26d4d7cd9ef573fea96c9470fea5b9deddd296ada896b6c44a3
   languageName: node
   linkType: hard
 
@@ -8364,7 +8364,7 @@ __metadata:
     less-test-suite: "npm:0.0.1"
     leven: "npm:4.1.0"
     linguist-languages: "npm:9.5.0"
-    magic-string: "npm:1.2.3"
+    magic-string: "npm:1.4.1"
     make-synchronized: "npm:0.8.0"
     mdast-util-from-markdown: "npm:2.0.3"
     mdast-util-gfm: "npm:3.1.0"